FANTASIA¶
Functional ANnoTAtion based on embedding space SImilArity
FANTASIA is an advanced pipeline designed for automatic functional annotation of protein sequences using state-of-the-art protein language models. It integrates deep learning embeddings and similarity searches in vector databases to associate Gene Ontology (GO) terms with proteins.
Set up FANTASIA and run your first annotation. 5 min Beginner See Start here →.
Embeddings, lookups, and evaluation details. PLMs ESM ProtT5 ProSTT5 Explore Method.
Performance, metrics, and species panels. Benchmarks See Results.
Autodoc-driven reference for modules and classes. autodoc Browse API Reference.
Citation info, datasets and reproducibility. BibTeX See References.
Questions, issues, and collaborations. Get in touch Go to Contact Information.
What is FANTASIA?
A vector-search based functional annotation pipeline leveraging protein language models and Gene Ontology mappings.
Paper-like structure